PhD Studentship in Bioinformatics and Cardiovascular Biology - Exploring the Application of Geocomputational Methods to High Resolution Spatial Transcriptomics Data from the Human Heart

Award summary

100% of home tuition fees paid and an annual stipend (living expenses) of £21,805 (2026-27 UKRI rate). Successful international candidates will be required to fund difference between the home fees and international fees.

Overview

Interested in bioinformatics, and high-resolution mapping of human heart? This PhD project will investigate how computational geography methods can be scaled to analyse next-generation spatial transcriptomics data, advancing our understanding of cardiac ageing and disease.

Background: Spatial ‘omics methods measure gene or protein expression in their native context. We have shown that the micro-scale maps they generate can be analysed using computational geography methods developed for macro-scale data. Our toolkit, STExplorer, enables access to these approaches, improving understanding of spatial ‘omics localities.

As spatial ‘omics platforms such as 10X Genomics’ Visium rapidly increase in resolution, tools like STExplorer must evolve to handle larger datasets. High-definition spatial transcriptomics data are being generated in Newcastle to study links between cellular senescence and cardiovascular disease. These datasets will serve as a test case for developing STExplorer for HD analysis and will support insights into cardiac ageing.

Research aims: This computational biology project will apply our geospatial tools to new HD spatial datasets from human heart. You will:

• Develop capacity to analyse HD datasets using STExplorer
• Apply these tools to Visium HD datasets from the CARDIAC-MAP project
• Collaborate with supervisors and partners to assess their value for spatial ‘omics analysis

Research Environment: You will work across informatics and cardiac research groups in the Faculty of Medical Sciences, with expertise in spatial ‘omics, myocardial senescence, regeneration, and ageing. The project offers strong training in bioinformatics, data science, and cardiac biology.

Number of awards: 1

Start date: 21/09/2026

Award duration: 4 Years

Sponsor

Jeffcock and Luccock Endowment JJ Hunter Bequest
Faculty of Medical Sciences
Newcastle University

Supervisors

Dr Simon J Cockell, School of Biomedical, Nutritional and Sport Sciences

Professor Gavin Richardson, Biosciences Institute

Eligibility criteria

You must have, or expect to achieve, at least a 2:1 honours degree or international equivalent, in a subject relating to bioinformatics or biomedical science. Further qualification such as an MRes is advantageous.

• This award is available to home and international applicants. Successful international candidates will be required to make up the difference between home fees and international fees.
• English Language requirements: IELTS 6.5 overall, with 5.5 or more in each sub-skill.

How to apply

You must apply through the University’s Application Portal: applyto.newcastle.ac.uk

In ‘Course choice’ tab:

• Type of Study - ‘Postgraduate Research’
• Mode of Study - ‘Full Time’
• Year of Entry - ‘2026’
• Course code ‘8420F’
• Research Area – Leave Blank
• Press ‘Search’
• Select ‘PhD Biosciences (FT)’ and save selection. 

Upload:

A document or write into ‘Personal Statement’. Put code ‘BI102’ in ‘Studentship Reference’.

When prompted for a research proposal, select ‘Write Proposal’. Type in the title of the research project from this advert. A research proposal is not required.

Covering letter & CV, stating how your interests and experience relate to the project.

Degree transcripts/certificates and, if English is not your first language, a copy of your English language qualification if completed must be uploaded.

Contact details: Dr Simon J Cockell

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